PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g03430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 142aa    MW: 15333.3 Da    PI: 9.9314
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g03430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer44.82.9e-141312958
     ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRreve 58
                    mps++++ ++++++kCaACgCHRnFHRre++
  Vang04g03430.1  1 MPSPTATaADPSSIKCAACGCHRNFHRREPD 31
                    6777777799******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152310.548129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-9129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.0E-10730IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.1E-8101129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MPSPTATAAD PSSIKCAACG CHRNFHRREP DEPPIASTTH VIEYQPHHRH HPPPPFQAAG  60
ANRSPNSASP PPISSSYYPS APHMLLALSA GLAAPPESTA APSALTRKRF RTKFSQEQKE  120
KMHKFAEKLC AALFTKQSSD R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496509.12e-50PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG08e-29ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0L9U2544e-88A0A0L9U254_PHAAN; Uncharacterized protein
STRINGGLYMA18G49390.17e-41(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-15zinc finger homeodomain 1